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SRX9596813: GSM4947376: normoxia; Rattus norvegicus; ChIP-Seq
1 ILLUMINA (NextSeq 500) run: 39.6M spots, 3G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Aryl hydrocarbon receptor is essential for the pathogenesis of pulmonary arterial hypertension [ChIP-Seq]
show Abstracthide Abstract
Pulmonary arterial hypertension (PAH) is a devastating disease characterized by arteriopathy in the small to medium-sized distal pulmonary arteries, often accompanied by infiltration of inflammatory cells. Aryl hydrocarbon receptor (AHR), a nuclear receptor/transcription factor, detoxifies xenobiotics and regulates the differentiation and function of various immune cells. However, the role of AHR in the pathogenesis of PAH is largely unknown. Here, we explore the role of AHR in the pathogenesis of PAH. AHR agonistic activity in serum was significantly higher in PAH patients than in healthy volunteer and was associated with poor prognosis of PAH. Sprague-Dawley (SD) rats treated with the potent endogenous AHR agonist, 6-formylindolo[3,2-b]carbazole in combination with hypoxia develop severe pulmonary hypertension (PH) with plexiform-like lesions, whereas SD rats treated with the potent vascular endothelial growth factor receptor 2 inhibitors did not. Ahr-knockout (Ahr-/-) rats generated using the CRISPR/Cas9 system did not develop PH in the SU5416/hypoxia model. A diet containing Qing-Dai, a Chinese herbal drug, in combination with hypoxia led to development of PH in Ahr+/+ rats, but not in Ahr-/- rats. RNA-seq analysis, ChIP-seq analysis, immunohistochemical analysis, and bone marrow transplantation experiments shows that activation of several inflammatory signaling pathways were upregulated in endothelial cells and peripheral blood mononuclear cells, which led to infiltration of CD4+ IL-21+ T cells and MRC1+ macrophages into vascular lesions in an AHR-dependent manner. Taken together, AHR plays crucial roles in the development and progression of PAH and the AHR signaling pathway represents a promising novel therapeutic target for PAH Overall design: Examination of 3 different histone modifications in rat total lung tissue. ChIP-seq was conducted using pooled lung samples from SuHx rats at day4 , SuHx rats at 8weeks or normoxia control rats(day0) (3rats per group)
Sample: normoxia
SAMN16935447 • SRS7801097 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: ChIP-seq was conducted using pooled lung samples from SuHx rats at day4 , SuHx rats at 8weeks or normoxia control rats(day0) (3rats per group). Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with anti-AHR antibody(BML-SA210-0100, Enzo Life Sciences). Libraries were prepared according to Illumina's instructions.
Experiment attributes:
GEO Accession: GSM4947376
Links:
Runs: 1 run, 39.6M spots, 3G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR1315665139,637,5093G1.1Gb2021-02-26

ID:
12533446

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